Oral Presentation Australasian Cytometry Society 43rd Annual Conference and Workshop

Dendritic cell state heterogeneity uncovered through cytometry and CITE-seq (#22)

Janin Chandra 1 , Inga Rødahl 2 , Samuel Kelly 1 , Meihua Yu 1 , James Gotley 1 , Chenhao Zhou 1 , Susan Millard 3 , Stacey B Anderson 4 , Angelika N Christ 4 , Gabrielle Belz 1 , Samuel W Lukowski 1 , Ian H Frazer 1
  1. University of Queensland Diamantina Institute, Woolloongabba, QLD, Australia
  2. Karolinska Institutet, Stockholm, Sweden
  3. Mater Research, Woolloongabba, QLD, Australia
  4. The Institute for Molecular Bioscience, The University Of Queensland, Brisbane, QLD, Australia

Conventional dendritic cells (cDCs) are traditionally subdivided into cDC1 and cDC2 lineages, each characterised by specialised functions to shape T cell responses as required. Using imaging flow cytometry, we observed a population of DCs co-expressing cDC1 and cDC2-associated surface molecules. Using single-cell RNA sequencing with integrated cell surface protein expression (CITE-seq), we found that a proportion of mature cDC1 cells co-expressed cDC2 characteristic surface features, and a population of Sox4 and Siglech expressing DCs co-expressed features traditionally associated with cDC1, cDC2, pDCs and monocytes.  We observed that mice lacking the cDC1-required transcription factor Batf3 harboured increased numbers of DCs with lineage-mixed features. Here, mitotic immature Batf3-/- cDC1-like cells showed reduced expression of cDC1 features and increased levels of cDC2 features. An optimized flow cytometry panel allowed validation of these CITE-seq derived DC cell states. In conclusion, these data suggest that multiple cDC cell states can co-express lineage-overlapping features, revealing a level of previously unappreciated phenotypic cDC plasticity.